SE0250156

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4673
  • Arabidopsis lyrata
  • SE0250156
  • PIF/harbinger
  • To8
  • scaffold_7:14815059-14815279
  • TAA
  • AGACCATCTTTATCAATGGGTTCTTAAGAAAATCTTAAGATGATCTTAGTAAATTTTTAGTATTATTACTAAGAACCAAAGTTAAGAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                 G    C                             A                                   GAGTTGAG GAGTT    ACC
  AGACCATCTTTATCAAT GGTT TTAAGAAAATCTTAAGATGATCTTAGTAA TTTTTAGTATTATTACTAAGAACCAAAGTTAAGAT        G     GCTT   
  ||||||||||||||||| |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||        |     ||||    
  TCTGGTAGAAATAGTTA CCAA AATTCTTTTAGAATTTTATTAGAATCATT AAAAATCATAATAATGATTCTTGGTTTCAATTCTA        C     CGAG   
AA                 A    A                             A                                   -AATGGAG AAAAC    AAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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