SE0250159

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4676
  • Arabidopsis lyrata
  • SE0250159
  • PIF/harbinger
  • To35
  • scaffold_6:22448811-22449021
  • TAA
  • AGACCATGATTATTAG

Secondary structure and sequence

TSD    TIR
5'



3' 
TA   C            TAAAC       --CAAA      ATAAATC       TTAAAAAGTATTTAATTAAATGGCAAATGGTAAAATTGGTAAGAAAAGTTTCT
  AGA CATGATTATTAG     TTTTAGC      TCTTAG       TTAAGTA                                                     
  ||| ||||||||||||     |||||||      ||||||       |||||||                                                     T
  TCT GTACTAATAGTT     AGAATTG      AGAATC       TTAAAAA                                                     
AA   C            TACAA       TTACCA      ------A       ATCATATTTTTAGAATTCTAAATGGAGAATGTTTGTACAAAACCGAGAATTGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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