SE0250162

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4679
  • Arabidopsis lyrata
  • SE0250162
  • PIF/harbinger
  • To3
  • scaffold_1:9771819-9772201
  • TAA
  • AGGTGGTGTTATTCAATGAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA   T             G  -----A     - AT  -   TGAAATCCAACTTTAATCCAGTGTTATTCAACTAATGATTCTAAATCTAACTTTAAAATCTAGTGTTATTGGATCTTATACTTCATTAGATTTTAATAGTTTGGTGTTATTCAACTAAGATTTAAAATACTTCATTAAAATCCAGTGTTATTC
  AGG GGTGTTATTCAAT AT      TTTTT A  AG AAT                                                                                                                                                         
  ||| ||||||||||||| ||      ||||| |  || |||                                                                                                                                                          
  TCC CCACAATAAGTTA TA      TTTTC G  TT AGA                                                                                                                                                         
AA   C             G  CCTCAA     A --  A   AATTCCAAATCTAAACGAAAGATTATAACAAAAGTTCTTAGACAAACATACCTAAAGTTTTAGAGATGTCATATAGAACCTAAAACTAAGATTATTAAATGAGTAGTAAAGTTTACTAAACTATATGTTTTTTAAAAGTTCAGAAAATCAAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End
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