SE0230164

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4681
  • Arabidopsis lyrata
  • SE0230164
  • hAT
  • Hat12
  • scaffold_2:10008203-10008779
  • GTTAAAAC
  • AACCCTTGTTC

Secondary structure and sequence

TSD    TIR
5'



3' 
GTTAA           -AAAA     CTAGGCGTTAGTCGGGCGCTCGAGCCGGGCCTAGCGATTAATCGGTTAATCGGGGATTACACGGAAATTAATCGGGGATTAGTTTTAGGGCATTTATCTGAATGTGTGTATATATAAAATTTATTTGTTTAGATATCATTGAAAGTTGGTTTGGTGTAGTGGTTACGGCATATATTCTGTACTTATATTCCCGAGTTTGAGTCCCCATATCTCATTTTAATTCCCGTTTTGACTTATTCTTTAATGAAGGGTAAAATAGACAT
     AACCCTTGTTC     AATCG                                                                                                                                                                                                                                                                       
     |||||||||||     |||||                                                                                                                                                                                                                                                                        
     TTGGGGGCAAG     GCGCC                                                                                                                                                                                                                                                                       
CAAAA           CTTTT     GGAGGCGCCGGCGGATTCGCCGCTAATTCGCCAGCCGCTTGCCACCGGCGGCCCTAAACAGATTTAGCCCATCAATTAGCCTTTTTAGTTTTAAAAACATCAAATACCAATTTCTAAAATAATATATACAGTCTAGATAGTATAAACATGTTTTTTTAACTTGTTTTTGTTCAATTTTTACTACAAATTATATACTTTTTGCTCGTCGGTGGTAATAATCCCAAACTTTGAGCAGTTGGAATACACTTCTTCTACTAACAGAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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