SE0220166

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4683
  • Arabidopsis lyrata
  • SE0220166
  • Mutator
  • M1
  • scaffold_3:3089027-3089408
  • TTTTAGAAA
  • TTTAGAAAGGGTTTTGTGCAAAAAAATCCTCCAACTCGCCCATTTTTGCAACTTTACCCTCCATCTCCGAAAAATGCAGATTAATACTACAAAATCTCAAATAATATGCAATATAACCCTTATTCGTATATTGT

Secondary structure and sequence

TSD    TIR
5'



3' 
T   A                    A                                   C     C                       A  A           A                     A      AAAC    TTTCGGTCATATATATTGGTTTTTTAA       AAAGTAGAGTTGAACTCTTCATCGC
 TTT GAAAGGGTTTTGTGCAAAAA ATCCTCCAACTCGCCCATTTTTGCAACTTTACCCT CATCT CGAAAAATGCAGATTAATACTAC AA TCTCAAATAAT TGCAATATAACCCTTATTCGT TATTGT    GTTT                           AATTCTA                         
 ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||| ||||||    ||||                           |||||||                          
 AAG TTTTCCCAAAACACGTTTTT TGGGAGGTTGAGCGGGTAAAAACGTTGAAATGGGA GTAGA GCTTTTTACGTCTAATTATGATG TT AGGGTTTATTA ACGTTATATTGGGAATAAGTA ATGGCA    CAAG                           AAACTGT                         
A   A                    A                                   A     A                       C  C           C                     -      -GTT    --------------------CATTTTA       TTATTATATAGTTTAGCTTCGGGAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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