SE0250168

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4685
  • Arabidopsis lyrata
  • SE0250168
  • PIF/harbinger
  • To10
  • scaffold_4:6074539-6074871
  • TAA
  • AGGCTTTGAATGGTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA               G     A TGCTGCAGACCAGACTAAAATCGGATCAGTCCGCATTTAATTCACCATTCACTATTCCGGATTAGTATGCACTGTTGCATATTAAAAATCTCCAAACTAGTATGCCGCTGAACATACTACTCTATACCATCATAAATTCAAT
  AGGCTTTGAATGGTT TGTAG A                                                                                                                                              
  ||||||||||||||| ||||| |                                                                                                                                              G
  TCCGAAACTTACCAA TCAGG T                                                                                                                                              
AA               -     - ATACTACGCCTGACTTCTTACGTATATTTATAAAATCATACGTTTTACAGCCTGACATCATACCTCGTCTGTTAACATACAACCATACCTTAAATATAACCATACCTCGAAAATCTCTCATCTTACTTTTTTACATCTGTTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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