SE0220170

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4687
  • Arabidopsis lyrata
  • SE0220170
  • Mutator
  • M13
  • scaffold_1:29107434-29107757
  • CTAAAAAAC
  • CTAAAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
                            A    ATCAATTAGGAATAAAGGACTTATTTTGATGGCTTTTATAGAATTTGCCATTTTATCAAAAATTTTTGAAAATTGCCATTTTCTTGTAAACAAAAACACAAATTTACACATAATGCTTAGGTTTATTAAGTTTTATTTTT
                     CTAAAAA CTGA                                                                                                                                            
                     ||||||| ||||                                                                                                                                             
                     GATTTTT CGGT                                                                                                                                            
TCAAAAAATCCCCTAATAATA       -    AAAAACGAGTTGGTAAAAAGTTTTAACGGTAAAAGAGTAGTAAGAAAGTTTAAACGGTAAAAACGGTAAAAATTTTTGATTTTTAAACCTTTTTATTAAAGTATTTTGTATATGAAATATTGTTTTTGATATGGGATGTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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