SE0250175

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4692
  • Arabidopsis lyrata
  • SE0250175
  • PIF/harbinger
  • To25
  • scaffold_8:10071724-10071994
  • TTA
  • AGAGCATCTCCAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TT   G         --CCCCA      -     C       ---------TTCTAAT      CAA    C       --CTC        A    -              CAAA    ---     ------------------       TA
  AGA CATCTCCAA       CTCTAT TTTTT CTCTAAA                ATAGAG   AATT TCTCCAA     TACTCTAT TTCT ACTCTAAAATAGAG    AGTG   AAGAT                  TGCTCTA  
  ||| |||||||||       |||||| ||||| |||||||                ||||||   |||| |||||||     |||||||| |||| ||||||||||||||    ||||   |||||                  |||||||   
  TCT GTAGAGGTT       GAGATA AAAAA GAGATTT                TATCTC   TTAA AGAGGTT     ATGAGATA AGGA TGAGATTTTATCTC    TCAC   TTCTA                  ATGAGAT  
AT   G         ACATTTC      T     C       TATCTCATTGAAATAT      ATC    T       ACATA        -    A              --CA    ATT     TCTCCTTTTAATATATCA       AT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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