SE0230177

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4694
  • Arabidopsis lyrata
  • SE0230177
  • hAT
  • Hat43
  • scaffold_1:22036786-22037144
  • CTTACACT
  • CAGGGGCGGACCCA

Secondary structure and sequence

TSD    TIR
5'



3' 
CTTACACT   G          ---TT       -    --     ------    ---  AC     TAAAATAATTATA TTGTGTTTATGCATTAGAATTCTTAAAAAGCAAGCAGCAGTTTTGGTAATTTTATGTTTATTGACACCCCATAACCCATGTTTGATTCCCCAGTTTGACACTTTTTGATAAA
        CAG GGCGGACCCA     CAGGGGA AAGG  AGGGT      CAAG   TG  CTGGG             C                                                                                                                
        ||| ||||||||||     ||||||| ||||  |||||      ||||   ||  |||||             |                                                                                                                T
        GTT CCGCCTGGGT     TTATAAA GGGC  AGTAA      ACTT   TA  TAATA             A                                                                                                                
TCACATTC   A          TTTTT       T    CC     ATTTAT    TGA  --     ------------- ATCATATAACGTATTATTATAATAAGTTCATGTTACTTAGACCTTTTTTATAACACCAAAAGTGATGAAAAGCTGGTTGTTTTTGGATATATTTTGTTTTCTTTCCTCTATT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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