SE0250179

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4696
  • Arabidopsis lyrata
  • SE0250179
  • PIF/harbinger
  • To15
  • scaffold_5:2597450-2597659
  • TTA
  • AGACCATGATTA

Secondary structure and sequence

TSD    TIR
5'



3' 
TT   C        AAGGCA    CTTAAAGTTTTCTTAAGTTGGATCTTAGCAATAAATGATTAAAATTAAATCCCAACTAAACCATTATTGCTAAGAGGGTTTCTT
  AGA CATGATTA      GGTT                                                                                    
  ||| ||||||||      ||||                                                                                     
  TCT GTACTAAT      AGGT                                                                                    
AT   C        ------    ATCACAGAATCTTTATTTAGAATCCTTATAAATTCATTATATAAACATTTTATACCAAGAATTGATAAAAAAACAACGAATGGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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