SE0230180

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4697
  • Arabidopsis lyrata
  • SE0230180
  • hAT
  • Hat36
  • scaffold_8:21099649-21099914
  • GTCTCATA
  • CAGAGCCGGCTCT

Secondary structure and sequence

TSD    TIR
5'



3' 
GTCTCATA             AACATTTTGAA           T  AAAAAAA     GCCTAATTTCTTCTCAAAAAAATTGTTAAAGCATTACTACAAATGTGAGAATCGAACCCTCAACCTTGCACTTCCTTCTGGCCA
        CAGAGCCGGCTCT           GGCCACAAGCT AG       GAGAG                                                                                    
        |||||||||||||           ||||||||||| ||       |||||                                                                                     
        GTCTCGGCCGGGA           TCGGTGTTCGA TC       CTCCG                                                                                    
ATACTCTG             -----------           -  ------C     TACACGAACACCGGGGTCTACATCAATAATTATATAGCCGGGAGGAAAAAGATTTTAAGAGAATATCGAGTTGACCAATTTACG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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