Plant MITE

SE0230182

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4699
Arabidopsis lyrata
SE0230182
hAT
Hat8
scaffold_3:6186399-6186642
TCTACCAC
CATGGGCGGACCCAG

Secondary structure and sequence

TSD TIR

5'

3'

TCTACCAC  TG           ---TAA     - AGG  GGGCAACTGACCTGGTAAAATAATGATATAAACTTTTTTATGTGTAAGAAACCAGAAAAAAAACAGCAGTTGAGTTGGTATTTG
        CA  GGCGGACCCAG      GGGGA G   GT                                                                                    
        ||  |||||||||||      ||||| |   ||                                                                                    T
        GT  CCGCCTGGGTC      AAAAA G   GG                                                                                    
CACCATCT  CA           TTTAAC     T ---  TCCAGTAATTTTTTTTTTCCCTTTTTTAATTTGGAAAATACAGTTCTGTCCTTGAACTTGAGTTTTATCCCTCCAGTACCTGTG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0230182

TCTACCACCATGGGCGGACCCAGTAAGGGGAGAGGGTGGGCAACTGACCTGGTAAAATAATGATATAAACTTTTTTATGTGTAAGAAACCAGAAAAAAAACAGCAGTTGAGTTGGTATTTGTGTGTCCATGACCTCCCTATTTTGAGTTCAAGTTCCTGTCTTGACATAAAAGGTTTAATTTTTTCCCTTTTTTTTTTAATGACCTGGGTAAAAACAATTTCTGGGTCCGCCACTGTCTACCAC

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