SE0250183

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4700
  • Arabidopsis lyrata
  • SE0250183
  • PIF/harbinger
  • To39
  • scaffold_8:3578835-3579043
  • TAA
  • AGAGCAACATTATTGGTAGTCTCTTA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA   G  A     T             ---------------ATAT  GC     -------  AAT  A GATGAACACTTAGCTAAGAAACACTTTTTAACCCACCAAATGTCTT
  AGA CA CATTA TGGTAGTCTCTTA                   TG  TCTTA       GC   AG T                                              
  ||| || ||||| |||||||||||||                   ||  |||||       ||   || |                                              T
  TCT GT GTAAT ACCATCAGAGAAT                   AG  AATTG       TC   TA T                                              
AA   G  A     T             CCTTTTAAAATCTTTTTTT  --     AATTTTA  ---  - TTTTATTTCGTTTATAGAATTTTAACAATTCTTACAGAGAATCGAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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