SE0250184

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4701
  • Arabidopsis lyrata
  • SE0250184
  • PIF/harbinger
  • To40
  • scaffold_8:21381725-21381989
  • TAA
  • AGAGCATGGTCATGGGTGATA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA   G    GT           CTCA  A        T   AATT   T          ---AT      TGTTTAATGTTTTTTTTTAATTTTTTCTCATACTTTTGGCAAACGCGACCAATTAGGAGATGCCA
  AGA CATG  CATGGGTGATA    TA AGTATCAT AAG    TTT AATATTATTT     AATATT                                                                 
  ||| ||||  |||||||||||    || |||||||| |||    ||| ||||||||||     ||||||                                                                 C
  TCT GTAC  GTACCCACTAT    AT TCATAGTG TTC    AGG TTATAATAAA     AACTGT                                                                 
AA   G    AT           AAAA  C        -   ----   T          AATAT      TTTGTTAATCTTACCCATACTAATCATAGTTGGGTCACTATGAAAACTATGACCATAGTAGACTG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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