SE0250185

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4702
  • Arabidopsis lyrata
  • SE0250185
  • PIF/harbinger
  • To9
  • scaffold_1:12659308-12659542
  • TAA
  • AGGCCATGCGCAATGG

Secondary structure and sequence

TSD    TIR
5'



3' 
TA   C   G        -CGCATTTTCTCCCC       ------------------------------------------------   ATTAAAGTAATCGAAAATAAGAGAAAAGTTGTCTCTCTCCTCACACCCGGG
  AGG CAT CGCAATGG               GGGTGTG                                                ACT                                                   
  ||| ||| ||||||||               |||||||                                                |||                                                    
  TCT GTA GTGTTACC               CCCACAT                                                CTT                                                   
AA   C   G        CCATTCACACTCACA       TTTAAAAAAAATAATAATATTAAATTTCTCTCTCTCTTTTCTCTCTCT   TTTTTCTCTCTCTTTCTCTCTCTCACAGAATGTGGGCTCACATTTCAATGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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