Plant MITE

SE0250186

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4703
Arabidopsis lyrata
SE0250186
PIF/harbinger
To41
scaffold_6:20773082-20773343
TAT
GGCTTTGAATGGATGATGTG

Secondary structure and sequence

TSD TIR

5'

3'

TAT  C         --      T GAAAAA C    T   -    GAACAGACTAAAC    CTATTTTTGGAGCTGACAACAAACCGCCACGGACCAAGTTTATCTCTACGTAAAACCGGTCCATAGTTAGTCCTCCG
   GG TTTGAATGG  ATGATG G      G GGAC AAA CCGT             CACT                                                                             
   || |||||||||  |||||| |      | |||| ||| ||||             ||||                                                                              
   CC AAGCTTACC  TGCTGT C      C CCTG TTT GGCA             ACGC                                                                             
TAT  C         AA      - -AATCC A    -   A    ------------A    CAAACCTAGCGTAAAACAAATGGTCAGTATTTGATATTAGGTATCATCACGCCCAACTTTTTTTATCTTGTTCAGGC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0250186

TATGGCTTTGAATGGATGATGTGGAAAAAGCGGACTAAACCGTGAACAGACTAAACCACTCTATTTTTGGAGCTGACAACAAACCGCCACGGACCAAGTTTATCTCTACGTAAAACCGGTCCATAGTTAGTCCTCCGCGGACTTGTTCTATTTTTTTCAACCCGCACTACTATGGATTATAGTTTATGACTGGTAAACAAAATGCGATCCAAACCGCAAACGGATTTGTCCACCCTAACTGTCGTAACCATTCGAACCCTAT

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