Plant MITE

SE0250188

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4705
Arabidopsis lyrata
SE0250188
PIF/harbinger
To6
scaffold_7:11266000-11266251
TTA
AGAGCATGTGCAATGCAAGTTTCTCACCATAGTCTCTCAACTATAAAAGTAACAATAAAATAAAAAATAATAATATTTAATTATGTGAGTCTCTAGAAAAAGTGGAGAGAAGCTCTCAAAG

Secondary structure and sequence

TSD TIR

5'

3'

TT          C             CAC  T         AC           C                   A                     A               AG      A  TCT
  AGAGCATGTG AATGCAAGTTTCT   CA AGTCTCTCA  TATAAAAGTAA AATAAAATAAAAAATAATA TATTTAATTATGTGAGTCTCT GAAAAAGTGGAGAGA  CTCTCA AG   
  |||||||||| |||||||||||||   || |||||||||  ||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||  |||||| ||    
  TCTCGTACAC TTACGTTCAGAGA   GT TCAGAGAGT  ATATTTTCATT TTATTTTATTTTTTATTAT ATAAATTAATACACTCAGAGA TTTTTTCATCTCTCT  GAGAGT TC   
AT          A             TTA  T         AT           A                   A                     G               CA      A  CTC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0250188

TTAGAGCATGTGCAATGCAAGTTTCTCACCATAGTCTCTCAACTATAAAAGTAACAATAAAATAAAAAATAATAATATTTAATTATGTGAGTCTCTAGAAAAAGTGGAGAGAAGCTCTCAAAGTCTCTCCTATGAGAGACTCTCTCTACTTTTTTGAGAGACTCACATAATTAAATAATATTATTTTTTATTTTATTATTACTTTTATATATGAGAGACTTTGATTAGAGACTTGCATTACACATGCTCTTA

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