SE0220191

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4708
  • Arabidopsis lyrata
  • SE0220191
  • Mutator
  • M7
  • scaffold_3:22849183-22849729
  • TTACTTAAA
  • AAGGGTTTTTAGTAATAAAACCCCTCAACTAAAGATGAATCGTAAAAAAACCCCTCAACTATATATTTAGTGCAAAAACTCCTCAACTTTAAATATGTTCATGAAAATTTCCCTTCGTCTCCATTATCGTAAAAATTAGACGGGTTACAGTTAAATTGAAAC

Secondary structure and sequence

TSD    TIR
5'



3'
TTACTTA                                        C    A          AAC             C                 A            A           C    C  TTA           A             -           TGAAAAACGACATATATACACTTAA    CATGAATTGTAAACAAAAACAACAAAATCTTCTTCTATCTGATTATAAATCCTCAAACCTAATCTCTAAAGTTCTCAAA
       AAGGGTTTTTAGTAATAAAACCCCTCAACTAAAGATGAAT GTAA AAAACCCCTC   TATATATTTAGTG AAAAACTCCTCAACTTT AATATGTTCATG AAATTTCCCTT GTCT CA   TCGTAAAAATT GACGGGTTACAGT TAAATTGAAAC                         ACAA                                                                               
       |||||||||||||||||||||||||||||||||||||||| |||| ||||||||||   ||||||||||||| ||||||||||||||||| |||||||||||| ||||||||||| |||| ||   ||||||||||| ||||||||||||| |||||||||||                         ||||                                                                                
       TTCCCAAAAATCATTATTTTGGGGAGTTGATTTCTATTTA CATT TTTTGGGGAG   ATATATAAATCAC TTTTTGGGGAGTTGAAA TTATACAAGTAC TTTAAGGGGAG CAGA GT   AGCATTTTTAA CTGCCTGATGTCA GTTTAATTTTG                         AAGA                                                                               
AAATTCA                                        T    C          GTA             C                 C            G           A    T  CAC           C             A           --------CATTGTAAAAAGTCTTA    GGATTAACTGAAGATGTGGTGTGTTTGAAGTCTCTTAGAATGATACTATTTAATACCAAGTAGTTAAATCTAAAAAGTG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End