SE0220192

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4709
  • Arabidopsis lyrata
  • SE0220192
  • Mutator
  • M15
  • scaffold_4:12403548-12404278
  • TTGCTATAA
  • TAAGGGAATTTATA

Secondary structure and sequence

TSD    TIR
5'



3' 
TTGCTA      -   -        --   AACCATGGATTCAAAAAGAATATACAAACTAACCATGAGCTACAGTAACTTGTTGGTAACATGTCGGAATGCATGTGTAATTACGTATATATCTTTTGTAACACGCTTTTTTTTTCGAATTACATGTGATAGCATAATATATCTCTTTTTATCATGTATTTTTTTCGTATTACACGTTATTTATAAACAACAAATGGTATTTCTTGGAAAAAACATTCTATTCAGTATAATACCTCTCTTAATCATGTTATTTTGTAATAATACACGTTTTTTTATTAAGATCACATGTGATTTCTTTTTAAAAAAGATGATTATTTTTTAGCAATACACAATTTTT
      TAAGGG AAT TTATACAA  AGT                                                                                                                                                                                                                                                                                                                                                 
      |||||| ||| ||||||||  |||                                                                                                                                                                                                                                                                                                                                                 A
      GTTCCC TTA AATATACT  CGG                                                                                                                                                                                                                                                                                                                                                 
AATATC      A   T        AT   TTTATTTTGTGAGTTTAATTTTTTTATCATCTCTTTTTCAAAAAAACATCGTTTTATCGATACCTGAGTGCAACAGTCTACTTCACTTTATGGTTTTAATAGGAAACAAACAACGTTCTAGTTGCTATACGCTCTGTCAAAGCACTCTAAAAAGTTTTATCGTACATTGTAAATTTAAAGTGTACAATATAAATTGATTTTCTGTACTAAAAAGTTTTTTTGTATCACTTAAAAATTCTTTTTTGTAACAATGCATCACAAAAAATTCTTTTTTGTAACAATATCTTTTAAATTATACTTATCTTAAAAAAATTTTCCTTTAGTGTATATTAGAATT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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