Plant MITE

SE0210193

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4710
Arabidopsis lyrata
SE0210193
Tc1/Mariner
St11
scaffold_6:23768993-23769268
TA
TACTCCCTCCGTATCAAAAAGATTGATTTCATAGAGTTTT

Secondary structure and sequence

TSD TIR

5'

3'

         C      -      T      CAT  A     -------CAC     T  AG AAAATATTTAATGTTTAGTTATAAATGCATAATTTATTCATACCAAACCATTTCTCATAGCTATTAACCAATAGTAATTCAT
TACTCCCTC GTATCA AAAAGA TGATTT   AG GTTTT          ACTAA TA  A                                                                                  
||||||||| |||||| |||||| ||||||   || |||||          ||||| ||  |                                                                                   
ATGAGGGAG CATAGT TTTTTT ACTAAA   TC CAAAA          GTTTT TT  G                                                                                  
         A      A      T      AAC  -     TAAAAACATA     -  -- AACTAAAAGACATATAAAAAATAGTTAATTACAATTATTTAACACTTAAAGTTCTTAGTAATTAACTCTTAAAATTTTAAAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0210193

TACTCCCTCCGTATCAAAAAGATTGATTTCATAGAGTTTTCACACTAATTAAGAAAAATATTTAATGTTTAGTTATAAATGCATAATTTATTCATACCAAACCATTTCTCATAGCTATTAACCAATAGTAATTCATCAAATTTTAAAATTCTCAATTAATGATTCTTGAAATTCACAATTTATTAACATTAATTGATAAAAAATATACAGAAAATCAAGTTTTTTGATACAAAAATAAAACCTCAAAAATCATTTTTTTATGATACAGAGGGAGTA

Copy Cancel