SE0230196

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4713
  • Arabidopsis lyrata
  • SE0230196
  • hAT
  • Hat45
  • scaffold_3:14369288-14369488
  • GCTGATTT
  • TCAGGGCCGGTCCTGAA

Secondary structure and sequence

TSD    TIR
5'



3' 
GCTGATT         GT      A   TGGGGGCCTAAAAAAAGTTTAAGGATTTTATAGTAGTTTCTAAAATTGGGGGCCTTTTTATAAAAATAAAATA
       TCAGGGCCG  CCTGAA TTT                                                                         
       |||||||||  |||||| |||                                                                          
       GGTCCCGGC  GGACTT GTG                                                                         
TTTAGTC         AG      -   TCGTCCCACTTTGTTAACAAAACCCGTGGGTTTTAAGATGTGTAAAAAAGAAATATTTTATCCGGGGGTTTAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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