SE0230203

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4720
  • Arabidopsis lyrata
  • SE0230203
  • hAT
  • Hat36
  • scaffold_3:22164759-22165024
  • CGCGTAAG
  • GCGTAAGCAGAGCCGGCTCTA

Secondary structure and sequence

TSD    TIR
5'



3' 
  C    AA               ACATTTTGA     ACAAGCTTAGAAAAAAAAAGAGGCCTAATTTCTTCCCAAAAAAATTGTTAAAGCATTACTGCAAATGTGAGAATCGAACCCTCAACCTTACACTTCTTTCT
   GCGT  GCAGAGCCGGCTCTA         AGGCC                                                                                                     
   ||||  |||||||||||||||         |||||                                                                                                     G
   TGCG  CGTCTCGGCCGGGAT         CGGTG                                                                                                     
GAA    --               ---------     TTCGATCCCTCCGTACACGAACACCGGGGTCTACATCAATAATTATATAGCCGGGAGGAAAAAGATTTTAAGAGAATATCGAGTTGACCAATTTACGACCG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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