Plant MITE

SE0250205

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4722
Arabidopsis lyrata
SE0250205
PIF/harbinger
To42
scaffold_5:15427156-15427426
TCA
AGAGCATGTGCAGTGGGAGATTCTCATAAGTGTTCTCAAG

Secondary structure and sequence

TSD TIR

5'

3'

TC                   --A      T    G        AATATAAAAAATGAAAATAATAAAAAGTAAGAGAGA        CATGAGTTCTCATATGAAAACTTTTGAGAACCTCTTGAGAGACTCATGTCACACATGACAACATGTA
  AGAGCATGTGCAGTGGGAG   TTCTCA AAGT TTCTCAAG                                    GACATGAG                                                                   
  |||||||||||||||||||   |||||| |||| ||||||||                                    ||||||||                                                                   A
  TCTCGTACACGTCACCCTC   GAGAGT TTCA GAGAGTTT                                    TATATAAT                                                                   
AC                   CAA      -    -        ------------------------------------        AATATTATATGTATTTAATCAAATTAACATATTAATTTAAAATTTATTATTAAAAAAATTTTTGGTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0250205

TCAGAGCATGTGCAGTGGGAGATTCTCATAAGTGTTCTCAAGAATATAAAAAATGAAAATAATAAAAAGTAAGAGAGAGACATGAGCATGAGTTCTCATATGAAAACTTTTGAGAACCTCTTGAGAGACTCATGTCACACATGACAACATGTAATTGGTTTTTAAAAAAATTATTATTTAAAATTTAATTATACAATTAAACTAATTTATGTATATTATAATAATATATTTTGAGAGACTTTGAGAGAACCTCCCACTGCACATGCTCTCA

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