Plant MITE

SE0230206

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4723
Arabidopsis lyrata
SE0230206
hAT
Hat2
scaffold_4:4973019-4973232
CGTGTTAT
GTGTTATCAGGGGCGGACCCA

Secondary structure and sequence

TSD TIR

5'

3'

C   T   -              -----------   AAAATATTTATCCGGTGCAAAAAATGTTGTAAAGAGGAATTGAACCCTCCACCTCATATTTAAGGGGTGCAGTCTT
 GTG TAT CAGGGGCGGACCCA           GCC                                                                            
 ||| ||| ||||||||||||||           |||                                                                            T
 TAT GTG GTCCCCGCCTGGGT           TCC                                                                            
    T   C              GCAATCCCTTC   CCACGTCAACGTGGCCAATTTTATATTTTACAAAACTAATATATATCGTAAATAACTAGATTTCACCAGATCACCA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0230206

CGTGTTATCAGGGGCGGACCCAGCCAAAATATTTATCCGGTGCAAAAAATGTTGTAAAGAGGAATTGAACCCTCCACCTCATATTTAAGGGGTGCAGTCTTTACCACTAGACCACTTTAGATCAATAAATGCTATATATAATCAAAACATTTTATATTTTAACCGGTGCAACTGCACCCCTCTTCCCTAACGTGGGTCCGCCCCTGCGTGTTAT

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