Plant MITE

SE2220006

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4729
Zea mays
SE2220006
Mutator
M1
chr1:206261440-206261710
TTATGTAAA
TTATGTAAAGGCAACAACTAATATGCAATTAGCC

Secondary structure and sequence

TSD TIR

5'

3'

         A                       -  AATCAAGTC            G          G   CTGATTC    -    A  ATCCAACCATGAATCATATTTAACACTTAAACCCTTCCACCACCAGCTCGTGT
 TTATGTAA GGCAACAACTAATATGCAATTAG CC         TTGTGTGCAAGT TGCAAGCGAG TTC       GTTA GATA TG                                                     
 |||||||| ||||||||||||||||||||||| ||         |||||||||||| |||||||||| |||       |||| |||| ||                                                     A
 AATGTATT CCGTTGTTGATTATACGTTAGTC GG         AATACACGTTCG ACGTTCGCTC GAG       CAGA AATC TA                                                     
A        -                       T  ---------            A          G   ----AAT    C    -  ATACTAGATTAACATCTGTACTAGCACCAAACAATACCCCAAAAGATATTTAG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2220006

TTATGTAAAGGCAACAACTAATATGCAATTAGCCAATCAAGTCTTGTGTGCAAGTGTGCAAGCGAGGTTCCTGATTCGTTAGATAATGATCCAACCATGAATCATATTTAACACTTAAACCCTTCCACCACCAGCTCGTGTAGATTTATAGAAAACCCCATAACAAACCACGATCATGTCTACAATTAGATCATAATCTAACAGACTAAGAGGCTCGCTTGCAAGCTTGCACATAAGGTCTGATTGCATATTAGTTGTTGCCTTATGTAAA

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