Plant MITE

SE2250011

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4734
Zea mays
SE2250011
PIF/harbinger
To3
chr2:24253457-24253749
TTA
TAGGGGGTGTTTGGGAACAAAGTTTTT

Secondary structure and sequence

TSD TIR

5'

3'

T     -GG                    --          --   --   ----    TACAGTATTCTCAAATACTGCAGTATTATATACATAATGGTGTTTGGCAAGCTGGGTAAAATCTCTGTTTTCAAAACTGAAGTATTGCAAATA
 TAGGG   TGTTTGGGAACAAAGTTTTT  CTGCAGTTTT  GGA  AGA    ATAC                                                                                             
 |||||   ||||||||||||||||||||  ||||||||||  |||  |||    ||||                                                                                             C
 ATTCC   ACAAACCCTTGTTTCAAAAA  TTTGGTGTCA  AAC  TAT    TGAT                                                                                             
      GGG                    CT          AA   TT   GATA    ATGAAATCAATACTGTTATGGCATCAAATATTATGGCGTCAAAACTTTTTGACTCCAGGTCTCGATTCAAATCTTACGGAATTTTGTTGATAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2250011

TTAGGGGGTGTTTGGGAACAAAGTTTTTCTGCAGTTTTGGAAGAATACTACAGTATTCTCAAATACTGCAGTATTATATACATAATGGTGTTTGGCAAGCTGGGTAAAATCTCTGTTTTCAAAACTGAAGTATTGCAAATACTATAGTTGTTTTAAGGCATTCTAAACTTAGCTCTGGACCTCAGTTTTTCAAAACTGCGGTATTATAAACTACGGTATTGTCATAACTAAAGTATAGTATAGTATTTCAAAAACTGTGGTTTTCAAAAACTTTGTTCCCAAACAGGGCCTTA

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