SE2250012

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4735
  • Zea mays
  • SE2250012
  • PIF/harbinger
  • To4
  • chr2:148500167-148500362
  • TAA
  • AGGGCTAGTTTGGGAACCTCA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                     TTTTACCAA    TTTTCATTTTCCTAAGAAAAATTAGTTCATTTCTCCTTAAGGGATAGTTTGGGAACCCCAATTTCC
  AGGGCTAGTTTGGGAACCTCA         GAGA                                                                  
  |||||||||||||||||||||         ||||                                                                  C
  TCCCGATCAAACCCTTGGAGT         TAAA                                                                  
AA                     ---------    GGGTTCCCAAAAGATAAAAGGGTACCCTTTTACTTGATTAAAGAGAACCTTTTTATCTTTAGGGAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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