SE2230013

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4736
  • Zea mays
  • SE2230013
  • hAT
  • Hat2
  • chr2:221744566-221745120
  • ATCTTGAG
  • TCTTGAGTAGAGATGGCAATGGGTACCCG

Secondary structure and sequence

TSD    TIR
5'



3'
A  TT  G   A             ----     AA     AA  -   -   -   TTTTACCCGATATGAAGGCGGGTACGGGATGATTTCTCTACCCGCGGGTATGTTAATGGGTAAAAACCTCTACCCGTTGGGTAGACGGGTACGGGTATGGGTTGGTACTACCCATACCCGTCTACCCGTGGGTAAAATATACCCGCATCAATAGCACTATAAACATCTAATAGAGTCCAACTTAGCTAGAATAAAACCCTTCTCTAGTTATCATTTGTCTAGATA
 TC  GA TAG GATGGCAATGGGT    ACCCG  ACCCG  TA CCC GAC GGG                                                                                                                                                                                                                                 
 ||  || ||| |||||||||||||    |||||  |||||  || ||| ||| |||                                                                                                                                                                                                                                 C
 AG  CT ATC CTACCGTTGCCCA    TGGGC  GCCCA  TC TGG AAG TAT                                                                                                                                                                                                                                 
G  TT  A   C             TGTA     -A     --  A   T   G   GAGCATGGGTAGTTTTTTTTAAGATGGGCAGCCCAATGGGTATATATGAGCGCCCATATTTTAGAATGGGTATGGGCATGGGCGCGCCCATAAAAATGGGCAGCCCATTGGGCATGGGCAATCCTTTCTTAATTTAAGGTTATATGGTTAGTGAGTTTTATAATTTATTTGTATATTTTTGTTGAAGTTAAAATGTATATTGTTTAGTATACTAATGTATTGAAC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End