Plant MITE

SE2250014

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4737
Zea mays
SE2250014
PIF/harbinger
To5
chr2:143472470-143473015
TAA
AGGGCCTGTTTGTTTATCCTCCAGATTATATAATCTAGATTA

Secondary structure and sequence

TSD TIR

5'

3'

TA                    -CC              A     AATAATCCTAAGA      C  A AGTCCAGCTTATTTGCCCAGATTATATAATCTAACCCCTTGGATTATGATAATCCATAAGCAAGTGGGGAGATGCTTATTTCAGATTATTTTTTTCCCACTTCCCCACTACCCTTTCAAGTTTCCTAGAAATTACCCACCATTGCCATTATAATCCACCGAATCGGTTTTGCGCCTAGTACTAGTCAATTTGGGGATGAAGAAGGTGA
  AGGGCCTGTTTGTTTATCCT   AGATTATATAATCT GATTA             GGCAAA AA C                                                                                                                                                                                                                
  ||||||||||||||||||||   |||||||||||||| |||||             |||||| || |                                                                                                                                                                                                                 
  TCCCGGACAAACAAATGGGG   TCTAATATATTAGA CTAAT             CCTAAT AT A                                                                                                                                                                                                                
AA                    ATA              C     -----AAAAACCT      -  - TTAAACCTAATATATTAGGCCTAATAAAACCTAACTCATCAGGACAAACAAATGGATCTAATAAACTCAACAATTATACTAAGAAAACATACTCCTTCTGTTCTTACGGGAGATATAAACATGATCCAACTTTGAGTACATACTTTTTTTTTAAGTTAACTGTAACCGTTTATAACGTAATCGTTATAATAGTGCCTTCCGTAAGTAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2250014

TAAGGGCCTGTTTGTTTATCCTCCAGATTATATAATCTAGATTAAATAATCCTAAGAGGCAAACAAACAGTCCAGCTTATTTGCCCAGATTATATAATCTAACCCCTTGGATTATGATAATCCATAAGCAAGTGGGGAGATGCTTATTTCAGATTATTTTTTTCCCACTTCCCCACTACCCTTTCAAGTTTCCTAGAAATTACCCACCATTGCCATTATAATCCACCGAATCGGTTTTGCGCCTAGTACTAGTCAATTTGGGGATGAAGAAGGTGACATGAATGCCTTCCGTGATAATATTGCTAATGCAATATTTGCCAATGTCAATTGAATTTTTTTTTCATACATGAGTTTCAACCTAGTACAAATATAGAGGGCATTCTTGTCTTCCTCATACAAAAGAATCATATTAACAACTCAAATAATCTAGGTAAACAAACAGGACTACTCAATCCAAAATAATCCGGATTATATAATCCAAATTATATAATCCTCCAAAAATAATCCAGATTATATAATCTATAGGGGTAAACAAACAGGCCCTAA

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