Plant MITE

SE2220019

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4742
Zea mays
SE2220019
Mutator
M2
chr1:10400925-10401186
TTTTTTAGC
GCAGGGAACGTATCCTGTGCTCATGGAGCTCTTGTACTCATATGAGCACTTTAAATTTGGTGCCTTCATTTCTCATCCAGGGGTGAGGGCAGCAGTGGCACAC

Secondary structure and sequence

TSD TIR

5'

3'

TTTTTTA  -----                                 A                           C       C         G    --     -------------GCA   -  A   AGTAGAGACAGACA
       GC     AGGGAACGTATCCTGTGCTCATGGAGCTCTTGT CTCATATGAGCACTTTAAATTTGGTGC TTCATTT TCATCCAGG GTGA  GGGCA                GTG GC CAC              
       ||     ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||| ||||  |||||                ||| || |||               
       CG     TCCCTTGCATAGGACACGAGTACCTCGAGAACA GAGTATACTCGTGAAATTTAGACCACG AAGTAAA AGTAGGTTC CACT  TCTGT                CAC CG GTG              
      A  ATTTT                                 C                           T       A         A    TA     AAAGGATCAAAGAAGA   A  -   GGAACAACAACGCG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2220019

TTTTTTAGCAGGGAACGTATCCTGTGCTCATGGAGCTCTTGTACTCATATGAGCACTTTAAATTTGGTGCCTTCATTTCTCATCCAGGGGTGAGGGCAGCAGTGGCACACAGTAGAGACAGACAGCGCAACAACAAGGGTGGCACACAGAAGAAACTAGGAAATGTCTATTCACACTTGGATGAAAAATGAATGCACCAGATTTAAAGTGCTCATATGAGCACAAGAGCTCCATGAGCACAGGATACGTTCCCTTTTTAGCA

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