SE2250020

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4743
  • Zea mays
  • SE2250020
  • PIF/harbinger
  • To9
  • chr2:10481612-10481975
  • TTA
  • AGGCCCCGTTTGTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TT   C           GGT   -   TGAATTCCATTCTAATAATCATAATTTAGACACAAACTAATTAAGTTAATACATTTGTATATGTAATTTATTTGTATATTATCCTAAATCATATGAGAGAGATAGTTATACACTACCCTTATGCTATAAAGAAGTAAGTAGAAGAGTGTGCTATAAG
  AGG CCCGTTTGTTT   TGG AAT                                                                                                                                                             
  ||| |||||||||||   ||| |||                                                                                                                                                              
  TCC GGGCAAACAAA   GGG ACT                                                                                                                                                             
AT   C           ---   A   AAAACTCCTTAACCTTAGATTGATAACCTCATACAATAAAAAATCTTACACTGTAAGGTATTGAAAGATTTCAAATATATATTCGGATAGAGTTTAAGTACCCCACTCTTTACCTTTAACTAAGATATCTAAATTTACGTTGAAAAGATTACATGTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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