SE2250026

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4749
  • Zea mays
  • SE2250026
  • PIF/harbinger
  • To12
  • chr2:31272174-31272470
  • TAA
  • AGGCCATGTTTGAATACACTAGAGCTAATAGTTGGCT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA     A      A  A                     ACTAAAAT  GTTGAAGACATCCAAACAGCTTAACTAAAAGTTAGCAATTAGATATTTTTAGCTAGAGACATCCAAACACTCCCAGCTAATAGTACAGCCAACTATTAGCTAC
  AGGCC TGTTTG AT CACTAGAGCTAATAGTTGGCT        TA                                                                                                       
  ||||| |||||| || |||||||||||||||||||||        ||                                                                                                        
  TCCGG ACAAAC TA GTGATCTCGATTATCAATCGA        CG                                                                                                       
AA     G      C  C                     -------C  ACTTTTCAACGATCATGTTAATCGACCGATTGTTTATCGATCGATTGATAATCAATTAAAGTCGATCCAACTTGGTCGATTATTGATTACTCATTAACTACCA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3