Plant MITE

SE2220032

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4755
Zea mays
SE2220032
Mutator
M3
chr1:38059196-38059426
CTACATAAA
AGGGCACGACTAATATGCAAGCAGGTACTAGGTACAAGAACGCAAGTAGACATTTTGATCCGTTAGATCTAGATCCAACGGTA

Secondary structure and sequence

TSD TIR

5'

3'

CTACATAA      -                           A    AAC C       CA     A            AG   C  C    TGTCCTATTTAGCACTTAAACCCT
        AGGGCA CGACTAATATGCAAGCAGGTACTAGGT CAAG   G AAGTAGA  TTTTG TCCGTTAGATCT  ATC AA GGTA                        
        |||||| ||||||||||||||||||||||||||| ||||   | |||||||  ||||| ||||||||||||  ||| || ||||                        T
        TCCCGT GCTGATTATACGTTCGTCCATGATCTA GTTC   C TTCGTCT  AAAAT GGGCAATCTAGA  TAG TT CCAT                        
 AAATACA      T                           C    GCA A       AA     C            CA   A  A    TTATGTTAACACTCCACCACCACC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2220032

CTACATAAAGGGCACGACTAATATGCAAGCAGGTACTAGGTACAAGAACGCAAGTAGACATTTTGATCCGTTAGATCTAGATCCAACGGTATGTCCTATTTAGCACTTAAACCCTTCCACCACCACCTCACAATTGTATTTACCATTAGATACAGATCTAACGGGCTAAAAAATCTGCTTACACGCTTGCATCTAGTACCTGCTTGCATATTAGTCGTTGCCCTACATAAA

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