SE2230038

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4761
  • Zea mays
  • SE2230038
  • hAT
  • Hat10
  • chr1:72915125-72915656
  • CTCATACT
  • TAGGGATGGCAATCGGGTGGGTAATACGCGGATA

Secondary structure and sequence

TSD    TIR
5'



3' 
CTCATACT             -----     --      ---TA        TATAG      AATCCATACCCGCGAGACAAAACTAAACCCATACCCGTACCCATAAACGTTCATGGGTATGGATCTGTACCCATACCCATACCCGCCGGGTATCCGCTATCCGGTGGATACCCGTTACCCGCCCGCCCACTACAAATTTAGCATTCAACATCAAACAACAATTTTATCACATGCCAAAAACAATTATCATTCCAGTAGCATGAAATGAT
        TAGGGATGGCAAT     CGGGT  GGGTAA     CGCGGATA     TTCGCG                                                                                                                                                                                                                 
        |||||||||||||     |||||  ||||||     ||||||||     ||||||                                                                                                                                                                                                                 A
        ATCCCTACCGTTA     GCCCA  CCCATT     GCGCCTAT     ATAGGT                                                                                                                                                                                                                 
TCATACTC             CCCAT     TA      TATTG        ---TA      AACCTATACCCATACCACCTTAAATCATAGGCGCCCATGCCAATACCTATATTATTCCATAGGTGCCTATTAAAAAAGCGCCCATACCTATAGGTCATAGGTATGGGCAATGGGTTACCTATAGACCACACCCGGTAAACCTAAATTATATAATAGGATTAAAGAGTAAAAAGTCAAAAATAGGTACTGTACAACAAACCACGACCTTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3