SE2250044

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4767
  • Zea mays
  • SE2250044
  • PIF/harbinger
  • To18
  • chr1:238647623-238648017
  • TAA
  • AGGGTGTGTTTGGTTGAGGAGTGGGAGAGAATAGAGAGGCTCCATTCCA

Secondary structure and sequence

TSD    TIR
5'



3'
TA                      G   G     A   A  CTC       ATTT    GA      G  TCTAACAAAATA -- -        G  TCCTAGATCTCCATATGAAAATTTACCATAAATAGTTGGAACGCTCTCGATCCACAAAAACAACCGGATGCGAGCGCTCTCCCGGACGCAAGCGCTTCTCCCCTCTCCT
  AGGGTGTGTTTGGTTGAGGAGT GGA AGAAT GAG GG   CATTCCA    TTTG  TGTTTG TT            A  G AGCGGAGT GC                                                                                                             
  |||||||||||||||||||||| ||| ||||| ||| ||   |||||||    ||||  |||||| ||            |  | |||||||| ||                                                                                                              
  TCCCACACAAACCAACTTCTCA TTT TCTTA CTC CC   GTAAGGT    AAAC  TCTTAC CT            C  C AGATAGGA AC                                                                                                             
AA                      G   A     C   A  AAA       -CAT    --      -  ------------ AA A        C  AAACCGTTCTTCTTGTCTCGGCGAGGTAAGAAACAAACGAACTTCTCATCTTATCTCGCCTCGGCGAGGTAATAAACAAACCAACCTCTCGACATACTCACATCTCCCC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End