SE2250053

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4776
  • Zea mays
  • SE2250053
  • PIF/harbinger
  • To23
  • chr1:264526543-264526834
  • TTA
  • AGAGCAACTCCAAGAG

Secondary structure and sequence

TSD    TIR
5'



3' 
TT                -     GTATATGGTTTTGTAAAAGTAAATTTAGCTAATATTAAAAGAAAATTGTATCCAATAGACTTTGTAAACGACTCTTCAAATTTAGTGGCTCTCTGTTTCTCCATCTTCGCTCTCCATTTTTG
  AGAGCAACTCCAAGAG ACTAT                                                                                                                          
  |||||||||||||||| |||||                                                                                                                          G
  TCTCGTTGAGGTTCTC AATCG                                                                                                                          
AT                T     ATTTTTCTGATCGGTTTAAATGACTAAATCGATAAGAGATTTTATCTAAAATTTCTGTTTCACATCCAATTAGGTTGTCTGAGCCATTTGGATGCCTGACTTATCTCTCACTTCGTACGATA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End
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