SE2250057

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4780
  • Zea mays
  • SE2250057
  • PIF/harbinger
  • To26
  • chr2:162098854-162099220
  • TAA
  • AGGCCCTGTTTCAATCCCATTAGATAAACTTTAGCAGCTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                C    A      C      AG   TTTTTATCTACTTTTA   ATTTAGTGA     A      AGCTAATGGTGTGTGATAAAATTTAGCACCTATTATCTTATAAGCTGCTCAAGGGGTGCTAAAAGTAGCTAAACGTGGGCCAGTGAACCCTATTTTCCACCCATACCCTCCAAC
  AGGCCCTGTTTCAATC CATT GATAAA TTTAGC  CTT                GCC         CCTAA GAGGAG                                                                                                                  
  |||||||||||||||| |||| |||||| ||||||  |||                |||         ||||| ||||||                                                                                                                  C
  TCCGGGACAAAGTTAG GTAA CTATTT AAATCG  GGA                CGA         TTTGA AATCGG                                                                                                                  
AA                A    C      A      AA   ----------------   ---------     -      TATATTTAACTTCACGATTTCAAATCGAGGAACCCCACAAATCTGATGAGATTATTTCAAATCGTGTAATCTTATTTTTCTGTGGATACGGGGATTACTCCTCTCTCCCTTATT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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