Plant MITE

SE2220058

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4781
Zea mays
SE2220058
Mutator
M5
chr2:103046747-103046997
ACTAGAATG
CTAG

Secondary structure and sequence

TSD TIR

5'

3'

   A    AATG             A  A         TC  C                                C                  C  C         GT             A AGAGT
    CTAG    GAGAACGTATCTT TG GCAAGGAGC  TG TGCTCCCATGAGCAAAATCAATCCAGACCACA CCTCCACATCCAACGGTG TG GTCAGGGGG  TTTTGTAAAATGT C     
    ||||    ||||||||||||| || |||||||||  || |||||||||||||||||||||||||||||||| |||||||||||||||||| || |||||||||  ||||||||||||| |     T
    GATC    CTCTTGCATAGAA AC CGTTCCTCG  AC ACGAGGGTACTCGTTTTAGTTAGGTCTGGTGT GGAGGTGTAGGTTGCCAC AC CAGTCCCCC  AAAACATTTTACA G     
GTAA    ---A             C  G         CA  C                                A                  A  A         --             A AAACG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2220058

ACTAGAATGGAGAACGTATCTTATGAGCAAGGAGCTCTGCTGCTCCCATGAGCAAAATCAATCCAGACCACACCCTCCACATCCAACGGTGCTGCGTCAGGGGGGTTTTTGTAAAATGTACAGAGTTGCAAAGAACATTTTACAAAACCCCCTGACACAACACCGTTGGATGTGGAGGATGTGGTCTGGATTGATTTTGCTCATGGGAGCACCAACGCTCCTTGCGCACAAGATACGTTCTCACTAGAATG

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