Plant MITE

SE2250059

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4782
Zea mays
SE2250059
PIF/harbinger
To9
chr2:42584439-42584804
TTA
ACGGGGCGTTTGGATC

Secondary structure and sequence

TSD TIR

5'

3'

TT   GGG          CCT  ATTTTAGAGGAATTGGATTCACTCAATAAAGTAACTTATTTAGTTTGGAATTTGACATTCCACCACTTTCCAAAGTTCAGATATAAGCCTATCTCAAATTCATGGGGTGGAGGGTGGGAAATGATTTTATGCATTGGTAGAATTTGTTTCTACTCTGTAA
  ACG   CGTTTGGATC   TC                                                                                                                                                                
  |||   ||||||||||   ||                                                                                                                                                                 
  TGC   GCAAACCTAG   CC                                                                                                                                                                
AT   GGG          TAA  TTAACTTAAGGTAAGATTATTATCATTAAATCCGTATATAGTTAATTCGATTAAGTCAAAATACATTTTATATAAACATATGATAATAATCGTTCTACAACCTCTATAAATACACGATGTAGAAATGATATCTCATCACTCTTCTTCTCACAGTACATTC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2250059

TTACGGGGCGTTTGGATCCCTTCATTTTAGAGGAATTGGATTCACTCAATAAAGTAACTTATTTAGTTTGGAATTTGACATTCCACCACTTTCCAAAGTTCAGATATAAGCCTATCTCAAATTCATGGGGTGGAGGGTGGGAAATGATTTTATGCATTGGTAGAATTTGTTTCTACTCTGTAACTTACATGACACTCTTCTTCTCACTACTCTATAGTAAAGATGTAGCACATAAATATCTCCAACATCTTGCTAATAATAGTATACAAATATATTTTACATAAAACTGAATTAGCTTAATTGATATATGCCTAAATTACTATTATTAGAATGGAATTCAATTCCAATGATCCAAACGGGGCGTTA

Copy Cancel