Plant MITE

SE2250060

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4783
Zea mays
SE2250060
PIF/harbinger
To27
chr2:220034457-220034836
TTC
GGGCGTGTTTGTGACCCTGTCCCTGGCCAGCTCGGCTCGTTC

Secondary structure and sequence

TSD TIR

5'

3'

TTC            GA  C  T   T   C    C    -     AATTG   -C     - AGGCTAGCCTGTCCCGGCTACTGCAACTCACTTTGTTTGCGCACTTGTACCATATGAGCCTGGTTCAGACGAGCTGGTGTTTGTCACCCAATATGCAGCCAGGCTAGAAGACCAAAATTACCTAAACGCGGA
   GGGCGTGTTTGT  CC TG CCC GGC AGCT GGCT CGTTC     GAC  AGGCT G                                                                                                                                    
   ||||||||||||  || || ||| ||| |||| |||| |||||     |||  ||||| |                                                                                                                                     
   CCCGCACAAACG  GG AC GGG TCG TCGG CCGA GCGAG     GGC  GACGT G                                                                                                                                    
CTT            GC  T  C   -   -    A    C     -----   AC     C AGAACACAAACGCAGCGGACCGACCGAGCTCTCGGTCCGACACGCGCACGTTTAACTCAGAGAGTCGGACCGAGGTGTCTTTGCTCGAGTCCCAGGCAAAGGACCCTCGGACCGACGAGCACCGCGTTCCTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2250060

TTCGGGCGTGTTTGTGACCCTGTCCCTGGCCAGCTCGGCTCGTTCAATTGGACCAGGCTGAGGCTAGCCTGTCCCGGCTACTGCAACTCACTTTGTTTGCGCACTTGTACCATATGAGCCTGGTTCAGACGAGCTGGTGTTTGTCACCCAATATGCAGCCAGGCTAGAAGACCAAAATTACCTAAACGCGGAATCCTTGCGCCACGAGCAGCCAGGCTCCCAGGAAACGGACCCTGAGCTCGTTTCTGTGGAGCCAGGCTGAGAGACTCAATTTGCACGCGCACAGCCTGGCTCTCGAGCCAGCCAGGCGACGCAAACACAAGAGCTGCAGCACGGGAGCGCAGCCAGGCTGCTGGGCCATGGCGGCAAACACGCCCTTC

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