SE2250068

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4791
  • Zea mays
  • SE2250068
  • PIF/harbinger
  • To33
  • chr7:102341581-102341723
  • TTA
  • AGGGCTTGTTCGGTTATTCCCAAAACACATGGATTGGATGGGATTGGA

Secondary structure and sequence

TSD    TIR
5'



3' 
TT                -   C   AA  CA        A          AAAAATTGA   GAAGTTTGACTTG
  AGGGCTTGTTCGGTTA TTC CAA  CA  TGGATTGG TGGGATTGGA         GAA             
  |||||||||||||||| ||| |||  ||  |||||||| ||||||||||         |||              
  TCCCGAACAAGCCAAT GAG GTT  GT  ACCTAACT ACCCTAACCT         CCC             
AT                C   A   AG  AC        C          --------A   AAACTTAGGGTTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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