SE2230070

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4793
  • Zea mays
  • SE2230070
  • hAT
  • Hat16
  • chr6:163622794-163623437
  • CTCCGCGT
  • CGCGTTAGGGATGAAAACGGACGGA

Secondary structure and sequence

TSD    TIR
5'



3'
CTC    --T     A              AACGGACG     A   TTC    ATT      T   CA     T   CG  AA  ----    CAGGTCCGGAATAGTCGGGAACGGAAATGGGAGCGGGATAAACGGAATTGCGAAAACGAACGGAAACGGAAATACTAACGGAAACTCATAATTTAATACAAATAGAAATGTTATTGATGTTTGACTAGTGATTGATTGGCAGAACAATAACATAAAACAAATAGATATAGAGAGACAACATTCTATTGTTGTTTGGTTGTTAAATGTGTACATTTAGCTACATCTGATGTTGTTTAAG
   CGCG   TAGGG TGAAAACGGACGGA        GAAAA CCC   TCCC   TCCGTA CCG  TTTTA CAT  GA  CG    GGAT                                                                                                                                                                                                                                              
   ||||   ||||| ||||||||||||||        ||||| |||   ||||   |||||| |||  ||||| |||  ||  ||    ||||                                                                                                                                                                                                                                              A
   GCGC   ATCCC ACTTTTGCCTGCCT        TTTTT GGG   AGGG   GGGCAT GGC  AAGAT GTA  CT  GC    AAAG                                                                                                                                                                                                                                              
  T    CTC     A              --------     A   --C    -CT      -   AA     -   AA  GG  TGGC    GCATAAATGCCTTTTTATACCTTTGCCCTGCCTTTACCCTCTCCCGAATAAGGCAGGCAAAAACGCCCTAGGGCAAAAAAAGGCCTAACTTGGGCATAAATAAGGCATAAACTATTTATACCCTGCTCGGATTATACGTAATCATATATTTGATTTAGGAGCACATAAATCCACTGTTTAATATCGTGTTAACCCGTAACATTGGTGGCCGAGAAAAATTTATTGTTCACTAGATTTC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End