SE2220073

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4796
  • Zea mays
  • SE2220073
  • Mutator
  • M8
  • chr3:227047991-227048253
  • TACAGTTAT
  • GGCAACGACTGTTATGCAAGCAGTTCTTCTGTGCAAGCGTGCAAGCAAATCATCTGATCCATTAGGTTACGATCCAACC

Secondary structure and sequence

TSD    TIR
5'



3' 
TACAGTTAT                                                     C               C         --     ------ A  ACCATGGTTTGTTAGGGGGTTTTTTATAAAG
         GGCAACGACTGTTATGCAAGCAGTTCTTCTGTGCAAGCGTGCAAGCAAATCAT TGATCCATTAGGTTA GATCCAACC  ACAGA      T CA                               
         ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||  |||||      | ||                                
         CCGTTGCTGACGATACGTTCGTCAGGAAGACACGTTCGCACGTTCGTTTGGTA ACTAGGTAATCTAGT CTAGGTTGG  TCCAG      T TG                               
TATTGACAT                                                     A               A         CA     TGTAAA -  TGAATTTGAGAAGGTGGTGTTCGAGTTATTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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