SE2230074

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4797
  • Zea mays
  • SE2230074
  • hAT
  • Hat17
  • chr5:195751288-195751461
  • CGTAGATC
  • G

Secondary structure and sequence

TSD    TIR
5'



3' 
C    A  T    C -------   A  GGGCTATAATTTTTGCACTATAAGATTTAAGGATCGAAGCGGGTTAGGATCGGGCTTTATTTCT
 GTAG TC AGGG T       GAC AT                                                                
 |||| || |||| |       ||| ||                                                                 
 TAGA TG ATCC C       ACC TA                                                                
C    -  C    - CACCATT   -  GCACTAGGTTTATCAAGAAGTGTTTTACAGTTCCGGGATTTATTTAATATCAAGTTTTTACTGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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