Plant MITE

SE2250083

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4806
Zea mays
SE2250083
PIF/harbinger
To33
chr6:146614723-146614865
TAA
AGGGCTTGTTCG

Secondary structure and sequence

TSD TIR

5'

3'

TA            -GTTA   - T    T           A          -A   ATTGTGAAAGATTTTG
  AGGGCTTGTTCG     TTC C ATCC ATGTGGATTGG TGGGATTGGA  AAA                
  ||||||||||||     ||| | |||| ||||||||||| ||||||||||  |||                A
  TCCCGAACAAGC     GAG G TAGG TACACCTAACC ACCCTAACCT  CCA                
AA            AAAAC   A T    -           C          AC   AAGTTATGGTTTGTTC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2250083

TAAGGGCTTGTTCGGTTATTCCTATCCTATGTGGATTGGATGGGATTGGAAAAAATTGTGAAAGATTTTGACTTGTTTGGTATTGAAACCCATCCAATCCCACCCAATCCACATGGATTGAGAGCAAAACGAACAAGCCCTAA

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