Plant MITE

SE2250087

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4810
Zea mays
SE2250087
PIF/harbinger
To41
chr3:193475249-193475555
TAA
AGGGCCTGTTTGGCATGGCTC

Secondary structure and sequence

TSD TIR

5'

3'

TA    CC               CAG          -     AGGAGCTGTCCAGAGCATGCCAAACACCCTAACTCCAGAGTTGTAAACTCTATGGAGTTTGAGCTGCAGTACAATTTTTTGGAGTACCTCTTTTGCTGCTCTGAAAACTCCAA
  AGGG  TGTTTGGCATGGCTC   AGCAAAACTC CAAGG                                                                                                                 
  ||||  |||||||||||||||   |||||||||| |||||                                                                                                                 A
  TCCC  ACAAACCGTACCGAG   ACGAGGTGGG TCTCG                                                                                                                 
AA    AC               ---          G     TCGAGATGAGATTTTGAGACCCACCTCGTCGAGACGAGGTCTCAAATCTAACAAAGAGTATTGGTCACCGTTACCGCCCATTTATTGAGTTTTGAGGTACTGATCCAACGAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2250087

TAAGGGCCTGTTTGGCATGGCTCCAGAGCAAAACTCCAAGGAGGAGCTGTCCAGAGCATGCCAAACACCCTAACTCCAGAGTTGTAAACTCTATGGAGTTTGAGCTGCAGTACAATTTTTTGGAGTACCTCTTTTGCTGCTCTGAAAACTCCAAAAAAGCAACCTAGTCATGGAGTTTTGAGTTATTTACCCGCCATTGCCACTGGTTATGAGAAACAATCTAAACTCTGGAGCAGAGCTGCTCCACCCAGAGTTTTAGAGTAGAGCTGCTCTGGGGTGGAGCAGAGCCATGCCAAACACACCCTAA

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