Plant MITE

SE2230090

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4813
Zea mays
SE2230090
hAT
Hat19
chr7:166139640-166139833
CACGTGGG
CACGTGGGCAGGGGCGATTCTAGGGAGAGGCACAGGGGGGC

Secondary structure and sequence

TSD TIR

5'

3'

       GG          TT    ----------G      C   -----------       -----------------------AATGTCCCCCCTAAT    TACAAATTCCATAGA
  CACGT  GCAGGGGCGA  CTAG           GAGAGG ACA           GGGGGGC                                      CTTC               
  |||||  ||||||||||  ||||           |||||| |||           |||||||                                      ||||                
  GTGCA  CGTCCCCGCT  GGTC           CTCTCC TGT           CCCCCCG                                      GATT               
GG     --          TC    GTAAACTCTAA      C   TTAATCTAATT       ACAATTCTCTATAAAATGTAATAAATATACCACTAATC    TTTTTTAATCATCGA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2230090

CACGTGGGCAGGGGCGATTCTAGGGAGAGGCACAGGGGGGCAATGTCCCCCCTAATCTTCTACAAATTCCATAGAAGCTACTAATTTTTTTTAGCTAATCACCATATAAATAATGTAAAATATCTCTTAACAGCCCCCCTTAATCTAATTTGTCCCTCTCAATCTCAAATGCTGGCTTCGCCCCTGCACGTGGG

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