SE2250091

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4814
  • Zea mays
  • SE2250091
  • PIF/harbinger
  • To19
  • chr7:49294321-49294612
  • TAA
  • AGAGCATCTCCAAGAG

Secondary structure and sequence

TSD    TIR
5'



3' 
TA      T         TCATTCTAGTTTTC     CTAAATTATCAT        TCATTTGCATAAAAATTACTTTCTATATCTTTTCAATTTCAATCAGCTTTTCTATATCTTGTTTGCATTCTAGAGTCATTCACGTTTTCTATATTTGGCCAG
  AGAGCA CTCCAAGAG              GCTCT            TTGAAGAG                                                                                                      
  |||||| |||||||||              |||||            ||||||||                                                                                                       
  TCTCGT GAGGTTCTC              CGGGA            AATATAAG                                                                                                      
AA      T         --------------     ------------        AAGGATTAACTATATTTATCTCCAAAAACATTTTTTTTATGTTATGTTATCGAATAGATTTACCGATAGGTTTATGTCGGTAAAACATAAGGTTCAAAGAGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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