SE2250095

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4818
  • Zea mays
  • SE2250095
  • PIF/harbinger
  • To43
  • chr3:140718424-140718736
  • TAA
  • AGGGCATGTACAGTGGTGG

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                T  ------------TT   AG  GAGGCTCTTAAGGTGTTTAAGGGGTGTATTTGCAAAAAAAATCTTAGAGCCGTCTCTCCGTGAAGAGACGCCTCTGGCTCGTAAACCAAGTAGTAACAGACGCCTCACTTTCTACTGTACG
  AGGGCATGTACAGTGG GG              TAA  AG                                                                                                                         
  |||||||||||||||| ||              |||  ||                                                                                                                         A
  TCCCGTACATGTCACC CT              AGA  GG                                                                                                                         
AA                T  CTGTAGTTTTGCCA   --  TTCGTGTTCTCTGTTGATTCTCTGAGATAATATGTTACTTCACAAATATTTACATCAGATAATTATTTATGTTTTAATTTACGTAAACATGTTGTCGTCTAGCTATCTTGTCTGCTGTTTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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