SE2250100

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4823
  • Zea mays
  • SE2250100
  • PIF/harbinger
  • To45
  • chr4:217677593-217677790
  • TAA
  • AGGTGCTGTTTAGTTC

Secondary structure and sequence

TSD    TIR
5'



3' 
TA     C     A    AGAC    TTAAG GA   GT      ATCTC    -C  C        TTA     TATAATTAGATTTGATAGTAGTATGTAGTA
  AGGTG TGTTT GTTC    GTTG     G  ATG  AATGAG     TTAC  GG GGTAATGG   CTAGT                              
  ||||| ||||| ||||    ||||     |  |||  ||||||     ||||  || ||||||||   |||||                              T
  TCCAC ACAAA CAAG    CGGC     C  TGC  TTACTT     AATG  CC CCATTATC   TGGCT                              
AA     C     C    ----    -TTTA AT   AT      -----    TA  -        -TA     ATGAAGACAAGCCAACCCGAAAAAGATCAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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